--- id: "/tags/biology-protein/" title: "Biology Protein" creator: null creator_url: null creator_x: null url: "https://skillissue.dev/tags/biology-protein/" level: null level_max: null category: null subcategory: null region: null license: null license_scope: null access: null models: null source_date: null date_added: null resource_kind: null verification_basis: null access_evidence: null domain_top: null domain_sub: null last_verified: null --- # Biology Protein [Beginner](/levels/beginner/index.md) [Intermediate](/levels/intermediate/index.md) [Advanced](/levels/advanced/index.md) [Expert](/levels/expert/index.md) 30 resources · page 1 of 1 - ### [AlphaFold 2](/frontier/research-feeds/alphafold-2/index.md) Creator not supplied; see original source. DeepMind AlphaFold GitHub repo: open-source code for AlphaFold 2 protein structure prediction. Not applicable (entity) · unknown · unknown resource · en - ### [AlphaGenome](/frontier/research-feeds/alphagenome/index.md) Creator not supplied; see original source. DeepMind AlphaGenome GitHub repo: API client for the AlphaGenome regulatory variant model. Not applicable (entity) · unknown · unknown resource · en - ### [Boltz](/frontier/research-feeds/boltz/index.md) Creator not supplied; see original source. Boltz GitHub repo: open biomolecular interaction models, with Boltz-2 adding binding affinity prediction. Not applicable (entity) · unknown · unknown resource · en - ### [Chai Discovery](/frontier/research-feeds/chai-discovery/index.md) Creator not supplied; see original source. Chai Discovery chai-lab GitHub repo: Chai-1 biomolecular structure prediction model. Not applicable (entity) · unknown · unknown resource · en - ### [CZ CELLxGENE](/frontier/research-feeds/cz-cellxgene/index.md) Creator not supplied; see original source. CZ CELLxGENE Discover: curated, standardised single-cell datasets to find, download and explore, used to train cell models. Not applicable (entity) · unknown · unknown resource · en - ### [DeepVariant](/frontier/research-feeds/deepvariant/index.md) Creator not supplied; see original source. Google DeepVariant GitHub repo: deep learning pipeline for calling genetic variants from sequencing data. Not applicable (entity) · unknown · unknown resource · en - ### [ESM (EvolutionaryScale)](/frontier/research-feeds/esm-evolutionaryscale/index.md) Creator not supplied; see original source. EvolutionaryScale ESM GitHub repo, now under Biohub: ESM protein language models with tutorials. Not applicable (entity) · unknown · unknown resource · en - ### [ESM (Meta, ESM-2/ESMFold)](/frontier/research-feeds/esm-meta-esm-2-esmfold/index.md) Creator not supplied; see original source. Meta ESM GitHub repo: pretrained protein language models ESM-2 and ESMFold. Not applicable (entity) · unknown · unknown resource · en - ### [ESM protein models](/frontier/research-feeds/esm-protein-models/index.md) Creator not supplied; see original source. Biohub ESM GitHub repo: ESM protein language models including ESMC and ESMFold2, with tutorials. Not applicable (entity) · unknown · unknown resource · en - ### [evo2 (Arc Institute)](/frontier/research-feeds/genomics-evo-2/index.md) Creator not supplied; see original source. Arc Institute Evo 2 GitHub repo: genome modelling and design model across all domains of life. Not applicable (entity) · unknown · unknown resource · en - ### [Inceptive](/frontier/research-feeds/inceptive/index.md) Creator not supplied; see original source. Inceptive: company building biological foundation models to design RNA and medicines. Not applicable (entity) · unknown · unknown resource · en - ### [InstaDeep Nucleotide Transformer](/frontier/research-feeds/instadeep-nucleotide-transformer/index.md) Creator not supplied; see original source. InstaDeep Nucleotide Transformer GitHub repo: foundation models for genomics and transcriptomics. Not applicable (entity) · unknown · unknown resource · en - ### [Isomorphic Labs](/frontier/research-feeds/isomorphic-labs/index.md) Creator not supplied; see original source. Isomorphic Labs: DeepMind spin-out applying AlphaFold-line models to drug discovery. Not applicable (entity) · unknown · unknown resource · en - ### [MICrONS Explorer](/frontier/research-feeds/microns-explorer/index.md) Creator not supplied; see original source. MICrONS Explorer: data portal for a cubic-millimetre mouse cortex connectome reconstructed with machine learning. Not applicable (entity) · unknown · unknown resource · en - ### [OpenCRISPR](/frontier/research-feeds/opencrispr-research-repository/index.md) Creator not supplied; see original source. Profluent OpenCRISPR GitHub repo: AI-generated gene editing systems such as OpenCRISPR-1. Not applicable (entity) · unknown · unknown resource · en - ### [OpenFold](/frontier/research-feeds/openfold/index.md) Creator not supplied; see original source. AQ Laboratory OpenFold GitHub repo: trainable PyTorch reproduction of AlphaFold 2. Not applicable (entity) · unknown · unknown resource · en - ### [Profluent](/frontier/research-feeds/profluent/index.md) Creator not supplied; see original source. Profluent: company using protein language models to design new proteins and gene editors. Not applicable (entity) · unknown · unknown resource · en - ### [AlphaFold 3](/frontier/research-feeds/protein-design-folding/index.md) Creator not supplied; see original source. DeepMind AlphaFold 3 GitHub repo: AlphaFold 3 inference pipeline. Not applicable (entity) · unknown · unknown resource · en - ### [ProteinMPNN](/frontier/research-feeds/proteinmpnn/index.md) Creator not supplied; see original source. ProteinMPNN GitHub repo: code for the ProteinMPNN protein sequence design model. Not applicable (entity) · unknown · unknown resource · en - ### [Protenix (ByteDance)](/frontier/research-feeds/protenix-bytedance/index.md) Creator not supplied; see original source. ByteDance Protenix GitHub repo: open-source biomolecular structure prediction reproducing and extending AlphaFold 3. Not applicable (entity) · unknown · unknown resource · en - ### [RCSB Protein Data Bank](/frontier/research-feeds/rcsb-protein-data-bank/index.md) Creator not supplied; see original source. RCSB Protein Data Bank: curated archive of experimentally determined 3D protein structures with search and analysis tools. Not applicable (entity) · unknown · unknown resource · en - ### [Recursion](/frontier/research-feeds/recursion/index.md) Creator not supplied; see original source. Recursion: company using AI and automated biology for drug discovery. Not applicable (entity) · unknown · unknown resource · en - ### [RoseTTAFold](/frontier/research-feeds/rosettafold/index.md) Creator not supplied; see original source. RosettaCommons RoseTTAFold GitHub repo: deep learning protein structure prediction models. Not applicable (entity) · unknown · unknown resource · en - ### [snnTorch](/frontier/research-feeds/snntorch/index.md) Creator not supplied; see original source. snnTorch documentation: tutorials for training spiking neural networks in PyTorch. Not applicable (entity) · unknown · unknown resource · en - ### [SpyTorch](/frontier/research-feeds/spytorch-spiking-nns-tutorial/index.md) Creator not supplied; see original source. SpyTorch GitHub repo: tutorial on surrogate gradient learning in spiking neural networks. Not applicable (entity) · unknown · unknown resource · en - ### [BirdNET](/frontier/research-feeds/birdnet/index.md) Creator not supplied; see original source. BirdNET site from Cornell: AI tool for identifying bird species from sound recordings. Intermediate · unknown · unknown resource · en - ### [AlphaFold 2 Nature paper](/frontier/research-feeds/alphafold-2-nature-paper/index.md) Creator not supplied; see original source. Nature paper (2021) on AlphaFold 2, highly accurate protein structure prediction. Advanced · unknown · unknown resource · en - ### [Baidu PaddleHelix](/frontier/research-feeds/baidu-paddlehelix/index.md) Creator not supplied; see original source. Baidu PaddleHelix GitHub repo: bio-computing platform on PaddlePaddle for drug discovery and protein models. Advanced · unknown · unknown resource · en|zh - ### [KAN: Kolmogorov-Arnold Networks](/frontier/research-feeds/kan-kolmogorov-arnold-networks/index.md) Creator not supplied; see original source. arXiv paper (2024) introducing Kolmogorov-Arnold Networks (KAN) with learnable activation functions on edges. Advanced–Expert · unknown · unknown resource · en - ### [Still Waters, Rapid Currents: Early Labor Market Transformation under Generative AI (NBER w33777)](/frontier/research-feeds/humlum-vestergaard-large-language-models-small-labor-market-effects-nber-w33777/index.md) Creator not supplied; see original source. NBER working paper w33777 by Humlum and Vestergaard on early labour-market effects of AI chatbots, using Danish data. Expert · unknown · unknown resource · en [Plain-text Markdown copy](/tags/biology-protein/index.md)