Biology Protein

30 resources · page 1 of 1

• AlphaFold 2

  Creator not supplied; see original source.

  DeepMind AlphaFold GitHub repo: open-source code for AlphaFold 2 protein structure prediction.

  Not applicable (entity) · unknown · unknown resource · en

• AlphaGenome

  Creator not supplied; see original source.

  DeepMind AlphaGenome GitHub repo: API client for the AlphaGenome regulatory variant model.

  Not applicable (entity) · unknown · unknown resource · en

• Boltz

  Creator not supplied; see original source.

  Boltz GitHub repo: open biomolecular interaction models, with Boltz-2 adding binding affinity prediction.

  Not applicable (entity) · unknown · unknown resource · en

• Chai Discovery

  Creator not supplied; see original source.

  Chai Discovery chai-lab GitHub repo: Chai-1 biomolecular structure prediction model.

  Not applicable (entity) · unknown · unknown resource · en

• CZ CELLxGENE

  Creator not supplied; see original source.

  CZ CELLxGENE Discover: curated, standardised single-cell datasets to find, download and explore, used to train cell models.

  Not applicable (entity) · unknown · unknown resource · en

• DeepVariant

  Creator not supplied; see original source.

  Google DeepVariant GitHub repo: deep learning pipeline for calling genetic variants from sequencing data.

  Not applicable (entity) · unknown · unknown resource · en

• ESM (EvolutionaryScale)

  Creator not supplied; see original source.

  EvolutionaryScale ESM GitHub repo, now under Biohub: ESM protein language models with tutorials.

  Not applicable (entity) · unknown · unknown resource · en

• ESM (Meta, ESM-2/ESMFold)

  Creator not supplied; see original source.

  Meta ESM GitHub repo: pretrained protein language models ESM-2 and ESMFold.

  Not applicable (entity) · unknown · unknown resource · en

• ESM protein models

  Creator not supplied; see original source.

  Biohub ESM GitHub repo: ESM protein language models including ESMC and ESMFold2, with tutorials.

  Not applicable (entity) · unknown · unknown resource · en

• evo2 (Arc Institute)

  Creator not supplied; see original source.

  Arc Institute Evo 2 GitHub repo: genome modelling and design model across all domains of life.

  Not applicable (entity) · unknown · unknown resource · en

• Inceptive

  Creator not supplied; see original source.

  Inceptive: company building biological foundation models to design RNA and medicines.

  Not applicable (entity) · unknown · unknown resource · en

• InstaDeep Nucleotide Transformer

  Creator not supplied; see original source.

  InstaDeep Nucleotide Transformer GitHub repo: foundation models for genomics and transcriptomics.

  Not applicable (entity) · unknown · unknown resource · en

• Isomorphic Labs

  Creator not supplied; see original source.

  Isomorphic Labs: DeepMind spin-out applying AlphaFold-line models to drug discovery.

  Not applicable (entity) · unknown · unknown resource · en

• MICrONS Explorer

  Creator not supplied; see original source.

  MICrONS Explorer: data portal for a cubic-millimetre mouse cortex connectome reconstructed with machine learning.

  Not applicable (entity) · unknown · unknown resource · en

• OpenCRISPR

  Creator not supplied; see original source.

  Profluent OpenCRISPR GitHub repo: AI-generated gene editing systems such as OpenCRISPR-1.

  Not applicable (entity) · unknown · unknown resource · en

• OpenFold

  Creator not supplied; see original source.

  AQ Laboratory OpenFold GitHub repo: trainable PyTorch reproduction of AlphaFold 2.

  Not applicable (entity) · unknown · unknown resource · en

• Profluent

  Creator not supplied; see original source.

  Profluent: company using protein language models to design new proteins and gene editors.

  Not applicable (entity) · unknown · unknown resource · en

• AlphaFold 3

  Creator not supplied; see original source.

  DeepMind AlphaFold 3 GitHub repo: AlphaFold 3 inference pipeline.

  Not applicable (entity) · unknown · unknown resource · en

• ProteinMPNN

  Creator not supplied; see original source.

  ProteinMPNN GitHub repo: code for the ProteinMPNN protein sequence design model.

  Not applicable (entity) · unknown · unknown resource · en

• Protenix (ByteDance)

  Creator not supplied; see original source.

  ByteDance Protenix GitHub repo: open-source biomolecular structure prediction reproducing and extending AlphaFold 3.

  Not applicable (entity) · unknown · unknown resource · en

• RCSB Protein Data Bank

  Creator not supplied; see original source.

  RCSB Protein Data Bank: curated archive of experimentally determined 3D protein structures with search and analysis tools.

  Not applicable (entity) · unknown · unknown resource · en

• Recursion

  Creator not supplied; see original source.

  Recursion: company using AI and automated biology for drug discovery.

  Not applicable (entity) · unknown · unknown resource · en

• RoseTTAFold

  Creator not supplied; see original source.

  RosettaCommons RoseTTAFold GitHub repo: deep learning protein structure prediction models.

  Not applicable (entity) · unknown · unknown resource · en

• snnTorch

  Creator not supplied; see original source.

  snnTorch documentation: tutorials for training spiking neural networks in PyTorch.

  Not applicable (entity) · unknown · unknown resource · en

• SpyTorch

  Creator not supplied; see original source.

  SpyTorch GitHub repo: tutorial on surrogate gradient learning in spiking neural networks.

  Not applicable (entity) · unknown · unknown resource · en

• BirdNET

  Creator not supplied; see original source.

  BirdNET site from Cornell: AI tool for identifying bird species from sound recordings.

  Intermediate · unknown · unknown resource · en

• AlphaFold 2 Nature paper

  Creator not supplied; see original source.

  Nature paper (2021) on AlphaFold 2, highly accurate protein structure prediction.

  Advanced · unknown · unknown resource · en

• Baidu PaddleHelix

  Creator not supplied; see original source.

  Baidu PaddleHelix GitHub repo: bio-computing platform on PaddlePaddle for drug discovery and protein models.

  Advanced · unknown · unknown resource · en|zh

• KAN: Kolmogorov-Arnold Networks

  Creator not supplied; see original source.

  arXiv paper (2024) introducing Kolmogorov-Arnold Networks (KAN) with learnable activation functions on edges.

  Advanced–Expert · unknown · unknown resource · en

• Still Waters, Rapid Currents: Early Labor Market Transformation under Generative AI (NBER w33777)

  Creator not supplied; see original source.

  NBER working paper w33777 by Humlum and Vestergaard on early labour-market effects of AI chatbots, using Danish data.

  Expert · unknown · unknown resource · en

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